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\f0\fs24 \cf0 Apollo-sv Change Log\
\
WE HAD SOME CONFLICTED WAYS TO REPORT CHANGES BETWEEN 2013-04-12 AND 2013-06-13. \
FROM NOW ON PLEASE ADD MATERIAL TO THE LOG AT THE BUTTOM. DATES ARE TO BE GIVEN AS YEAR-MONTH-DAY.\
THANKS!\
\
obsoleted class 'control measure start time' - MB 2013-05-22\
\
moved class "school closure duration" - MB 2013-05-22\
	under "action specification"\
\
added superclass restriction on 'fixed control measure start time specification - MB 2013-05-22\
	is expressed as NonNegativeInteger\
\
added data property - MB 2013-05-22\
	is expressed as\
\
added class (including UAL, definition, elucidation and class restrictions) - MB 2013-05-22\
	fixed control measure start time specification\
\
Test: Just testing whether submitting to the svn works again for me - MB 2013-05-22\
\
Moved under 
\i epidemic control measure plan specification
\i0  - WH 2013-05-20\
	
\i reactive control measure\
	school closure control measure\
	vaccination control measure\

\i0 \
Class restriction added - WH 2013-05-20\
	
\i epidemic control measure plan specification\
	vaccination control measure\

\i0 \
Definition added - WH 2013-05-20
\i \
	reactive control measure\
	school closure control measure\
	vaccination control measure
\i0 \
\
Comment added - WH 2013-05-20\

\i 	epidemic control objective specification\

\i0 \
Moved under 
\i action specification
\i0  - WH 2013-05-20\
	
\i antiviral supply schedule\
	vaccination administration capacity\
	vaccine supply schedule\
\

\i0 Moved under 
\i conditional specification
\i0  - WH 2013-05-20\
	
\i reactive control measure test\
\

\i0 Definition modified - WH 2013-05-20\
	
\i reactive control measure\
	school closure control measure\
	vaccination control measure\
	reactive control measure test\
	vaccination administration capacity\
	vaccine supply schedule
\i0 \
\
added class (including definition, UAL, and class restrictions) - MB 16-05-2013\
	count of exposed population\
	count of infectious population\
	count of recovered population\
\
added superclass restriction - MB 16-05-2013\
	pathogenic host role\
	infectious agent host role\
\
MIREOTed from IDO - MB 16-05-2013\
	pathogen\
\
added superclass restriction - MB 16-05-2013\
	host role\
	\
added class (including definition, UAL, and class restrictions) - MB 14-05-2013\
	count of susceptible population\
\
added equivalent class restriction on 'counting' - MB 14-05-2013\
	has_specified_output some count\
\
added equivalent class restriction on 'count' - MB 14-05-2013\
	is_specified_output_of some counting\
\
corrected typos - MB 14-05-2013\
\
moved under 'control measure dose schedule' - MB 06-05-2013\
	vaccination dose schedule'\
\
class - MB 06-05-2013\
	epidemic control measure plan specification\
\
class added (including UAL, label, definition, elucidation, initial class restriction [superclass]) - MB 06-05-2013\
	control measure dose schedule\
		Definition: "An action specification comprising the number of doses and their timing for 		administering a substance to an individual organism to prevent the negative effects of 		a specific infectious agent to that organism."\
		Elucidation: "A control measure dose schedule specifies the intended timing of initial 		and subsequent doses of for example a vaccine or an antiviral for an individual 		organism. "\
\
definition added - MB 06-05-2013\
	control measure compliance\
		"The measurement datum about the fraction of individuals in a population that accept 		to participate in a control measure when offered."\
	control measure response delay \
		"The measurement datum of the time interval from the decision to implement a 		epidemic control measure to the start of the epidemic control measure expressed in 		number of time intervals."\
\
Added new term from spread sheet, with elucidations an UAL - AH 3-05-2013\
\
class restriction added - AH 19-04-2013\
	control measure compliance - still needs to be more precise.  Does the ontology already model targets of control measures?\
\
Definition added and class restriction added - AH 19-04-2013\
	vaccine identifier \
	antiviral identifier\
\
class restriction added AH 19-04-2013\
	vaccination identifier\
	ascertainment fraction\
\
moved - AH 19-04-2013\
	antiviral specification\
	ascertainment delay\
	\
Added - AH 19-04-2013\
	simulation of organism\
\
\
Moved under 
\i proper name
\i0  and added
\i  new labels - 
\i0 AH 12-04-2013\
	
\i vaccine identifier \
	vaccination identifier \
	antiviral identifier 
\i0 \
\
Class restriction added\

\i 	count of simulated contagious population - 
\i0 AH 12-04-2013\
\
\
Deleted comment about vaccination not being able to be imported due to BFO 2.0.  In fact, we have vaccination imported into Apollo-SV - WH 2013-06-12\
	vaccination efficacy\
\
definition updated - WH 2013-06-12\
elucidation updated\
parent updated\
comment added\
class restriction removed\
	vaccination efficacy\
\
Added with label, UAL, elucidation, definition, and class restriction - WH 2013-06-13\
	measured vaccination efficacy\
	vaccination efficacy study design execution\
\
Added [based on RO representation; http://purl.obolibrary.org/obo/ro/release/2013-04-28/ro.owl]\
	ends\
	\
\
Added with label, UAL, elucidation, definition, and class restriction - MB 2013-06-15\
	control measure reactive endpoint fraction\
\
Added with label and definition - MB2013-06-17\
	educational institution (should be considered to be taken over by OMRSE)\
\
class restriction updated - MB 2013-06-15\
	count of simulated contagious population\
\
definition amended - MB 21-06-2013\
	simulates\
\
Added with label, definition UAL, elucidation, class restriction - MB 2013-06-26\
	school closure target facilities\
	\
	\
changed as many UALs as I could to camel case matching XSD and changed type to string - WH 2014-03-12\
\
Added with label, definition, and UAL - WH 2014-03-12\
	case quarantine control strategy\
	border control strategy\
	facility closure control strategy\
	travel restriction control strategy\
\
parent updated\
	antiviral efficacy\
	school closure control strategy\
	entry into host\
\
merged in IDO-less version - JH 2014-03-20\
\
Added with label, definition and UAL - MB 2014-03-24\
	clade name\
	census reference date\
	age range category\
\
Added with label, definition, subclass restriction, and UAL - MB 2014-03-25\
	time span category\
\
\
Added with label, definition, equivalent class restriction, and UAL - MB 2014-03-25\
	duration\
\
Added with label, definition, and UAL - MB 2014-03-27\
	disease identifier\
	conditional probability distribution\
	unconditional probability distribution\
\
Added with label and definition - MB 2014-03-27\
	joint probability distribution (not used in XSD 2.0.1)\
\
Moved -MB 2014-03-27 - MB 2014-03-27\
	Bayesian network (from TODO to joint probability distribution)\
\
Added with label and UAL - MB 2014-03-27\
	parametric probability distribution\
	discrete parametric probability distribution\
	continuous parametric probability distribution\
	discrete nonparametric probability distribution\
\
\
Added with label - MB 2014-03-27\
	nonparametric probability distribution (not used in XSD 2.0.1)\
	continuous nonparametric probability distribution (not used in XSD 2.0.1)\
\
Added with label, definition, and UAL - MB 2014-03-30\
	log normal distribution\
	Weibull contribution\
	continuous uniform distribution\
	gamma distribution	\
	delay from symptoms to treatment\
\
Added with label, definition, elucidation, and UAL - WH 2014-04-03\
	infectious disease control strategy trigger definition\
	apollo location code\
	contamination probability\
	control strategy stand-down delay\
\
Deprecated - WH 2014-04-03\
	beta\
	control strategy reactive start time information\
\
Updated UAL - WH 2014-04-03\
	transmission coefficient - beta from transmissionCoefficient\
	disease outcome - diseaseOutcome from DiseaseOutcome\
\
Added with label, definition, and UAL - WH 2014-04-04\
	infection acquisition from contaminated thing\
	infection acquisition from infectious host\
\
Added with label, definition, and UAL - MB 2014-04-09\
	disease surveillance capability\
	time delay to case detection\
	trigger definition\
	disease surveillance trigger definition\
	treatment surveillance trigger definition\
	probability of entry into a country is denied\
	probability of exit from a country is denied\
\
	\
Added with label and UAL - MB 2014-04-09\
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\f1\fs26 \cf0 	temporal trigger definition\
	seasonal function parameter\
	maximum seasonal latitude\
	minimum seasonal latitude\
	seasonal temporal offset\
	sensitivity of case detection\
	target populations and prioritization's information\
	school transmission multiplier\
	workplace transmission multiplier\
	household transmission multiplier\
	closeIndividualPlacesIndependently\
	communityTransmissionMultiplier\
	communityTransmissionMultiplier\
	maximum travel distance in km\
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\f0\fs24 \cf0 \
\
deprecated - MB 2014-04-09\
	antiviral control strategy\
	vaccination control strategy\
\
moved class - MB 2014-04-09\
	duration (under measurement datum)\
	infectious period duration (under duration)\
	latent period duration (under duration)\
	unit of measure\
\
edited label - MB 2014-04-09\
	infectiousness to infectiousness profile\
\
edited label and UAL - MB 2014-04-09\
	unit to unit of measure (UnitOfMeasure)\
	facility closure control strategy to place closure control strategy (\
\
Added with label, definition, axiom, and UAL - MB 2014-04-09\
`	duration of treatment course\
	number of doses in a treatment course\
\
Removed UAL - WH 2014-04-17\
           simulation of asymptomatic organism\
\
edited definition - WH 2014-04-17\
          control strategy reactive endpoint fraction\
          infectious period duration\
          latent period duration\
          basic reproduction number\
          vaccination preventable outcome \
\
edited elucidation - WH 2014-04-17\
           reactive control strategy threshold\
\
added with label, definition, and UAL - WH 2014-04-17\
           time scale name\
           treatment preventable outcome\
           time delay of treatment detection\
           time since time scale zero\
         \
added with label, definition, elucidation, and UAL - WH 2014-04-22\
      sensitivity of treatment detection\
      specificity of treatment detection\
      specificity of case detection\
\
deleted "ASV:" from label of - MB 2014-04-29\
	ASV:host\
	ASV:pathogen\
	ASV:infectious disease\
	ASV:asymptomatic host\
	ASV:immune population\
	ASV:infected population\
	ASV:susceptible population\
\
deleted "PCO:" from label of -MB 2014-04-29\
	PCO:population\
\
added definition - MB 2014-04-29\
	host\
	pathogen\
	infectious disease\
\
}